Welcome
Welcome to the Bioinformatics Shared Resource (BSR) website.
Here you can learn about our group, find information on the bioinformatics services we provide, and see the broad array of resources available to Burnham researchers. We can assist you in any of the following areas:
- Bioinformatics Classes
- Microarray Data Analysis
- Virtual Screening for Drug Discovery
- Computer-aided Drug Design
- Website and Database Development
- Informatics Guidance
- Systems Biology Support and Pathway Analysis
- Gene Family Analysis and Annotation
- Human Genome Analysis
- Proteomics Data Analysis
- Grant Preparation Assistance
Follow one of the links below to get started:
About the BSR
- Learn about the BSR's mission, personnel, and services.
Resources - Read about basic procedures and explore the hardware and software tools available at the Burnham Institute.
Events & Courses - See listings of upcoming seminars and course announcements.
INGENUITY PATHWAY ANALYSIS (IPA)
IPA is a web-based application that helps to analyze experimental data in the context of biological pathways and functions, search for genes, phenotypes and diseases, and create create/modify experimental models. IPA contains manually curated findings from full-text scientific articles. Here is sign up link (for Burnham): https://analysis.ingenuity.com/pa/account/signup.html . Ask Alexey Eroshkin (eroshkin@burnham.org) for Institutional License Key which you need to use in the form. Once you fill out this on-line form, you will receive an email with your private IPA account login name and password.
NEXTBIO DATA ANALYSIS NextBio is the search engine that enables scientists to
easily traverse incredible volumes of biological data to form novel hypotheses,
validate findings and test ideas. Researchers and clinicians
can enter a gene, protein, disease, or tissue of interest into a search box and
receive ranked answers to their queries based on an unparalleled knowledge
trove of biomedical information. Moreover, users can instantly correlate
metadata signatures generated from their research with the results of thousands
high throughput studies. You can register and start using NextBio from
dedicated, secured domain at https://bimr.nextbio.com/c/authentication/login.nb.
to formulate, validate and share answers to complex questions
across different assay platforms, organisms and research domains to advance
scientific and clinical discovery.
MetaCore/MetaDrug from GeneGo
GeneGo’s MetaCore/MetaDrug Discovery Platform
provides software and databases for genomics and cheminformatics analysis
in the context of manually curated pathways derived from full-text articles.
Researchers can batch upload their experimental data and share with colleagues.
They can then use this data for pathway analysis and ontological enrichment and
have a downloadable report with publication quality images. The system provides
in depth coverage of diseases, covering human, mouse, rat, dog, worm, yeast,
fly, chicken and chimpanzee. To have access to the system please email customersupport@genego.com and
you will receive your access keys. On line training is every first and last
Monday of the month - email training@genego.com to register.
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