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2014-2013 How-to Courses:

  • Do It Yourself Systems Biology: The Hidden Treasure in Pathway Analysis. Tutor: Ally Perlina (new member of Bioinformatics Core). Building 10 Room 1308, Lake Nona: A2220 (1:00pm 3:00pm ET). Day: Tuesday, May 20, 10:00-11:30 am (PST). Here are the pictures from the class: 1 and 2. There was great attendance at the class. Here is the link to the presentation (several slides were added).

  • Mining cancer databases - you can do it too. Tools and resources at SBMRI.  Presentation at CDSN Program Meeting. Tutor: Alexey Eroshkin, March 18, 13:00-15:00

  • TRANSFAC training. Tutor: Alexander Kaplun, PhD, Field Applications Scientist, BIOBASE Corporation. October, 8, 14:00-16:00, Bld.10, rm 1308

  • Bioinformatics class: Gene-centric bioinformatics analysis to guide cancer research. Tuesday, June 4, 10:00 am, Building 10, Room 1308. Tutors: Stacy Huang, Roy Williams and Alexey Eroshkin. During the class we will take one of human genes and walk you through several databases and bioinformatics tools to learn about changes in a gene's expression during tumorigenesis; assessing the potential impact of mutations on protein activity; distinguishing cancer-related driver mutations from passenger mutations, etc.

  • Workshop: Genomics data analysis tools at your fingertips (Oncomine, GEO and CCLE). Tue, 02/12/2013, 10:00-11:00am. Stacy Huang, Roy Williams and Alexey Eroshkin. Find links to the presentations in here: Oncomine, CCLE and GEO. Once again there was great attendance at the class (see here and here).

2012 How-to Courses and Meetings:

  • Statistics Primer (Dec 11, 2012, 10:00am PST) - Xiayu (Stacy) Huang. Power point presentation is here. There was great attendance at the class - see pictures 12 and 3.

  • Bioinformatics Users Group Meeting (Sept, 11, 2012, 10:00 am). Discussion about users experiences with our bioinformatics service. There were several valuable suggestions made at the meeting which we will try to implement soon. The picture from the meeting is here.

  • Advanced Statistics I (April 17, 2012) - Xiayu (Stacy) Huang. Power point presentation is here. Again there was great attendance at the class.

2011 How-to Courses:

  • Next-generation sequencing technology and data analysis: from reads to biology. June 8 (Wednesday) 11:00am PST, Building 10, rm 1308, Lake Nona: rm A1330, 2:00pm EST  - Jian-Liang (Jason) Li. Power point presentation is here. There was great attendance at the class - see picture1 and picture2.

  • Microarray (and Other Omics) Data Analysis, (May 26, 10:00am PST, Bld 10 rm 1308) - Roy Williams. Lake Nona: room A2220, 1:00pm EST. Power point presentation is here. There was great attendance at the class - see picture.

  • Homology, Similarity Searches and Alignments (April 5, 10:00am PST, Bld 10 rm 1308) - Kutbuddin Doctor. Lake Nona: room A2220 , 1:00pm EST. Power point presentation is here.

  • How Statistics Can Empower Your Research (Part 2) (Feb 23, 10:00am PST, Bld 10 rm 1308) - Xiayu (Stacy) Huang. Power point presentation is here. There was great attendance at the class - see picture.

  • We are hosting GeneGO Seminar for MetaCore users "Unraveling Pathways to Discovery". Date and place: Sept 22, 8am-5pm. bld 10, rm 1308. For program and registration use the link http://goo.gl/JczIx. Complimentary continental breakfast and lunch provided. This is a Torrey Pines Mesa event, so registration may be limited.

2010 How-to Courses:

  • How Statistics Can Empower Your Research (Part 1) (Dec 8, 11:00am PST, Bld 10 rm 1308) - Xiayu (Stacy) Huang. Power point presentation is here.

  • NextBio integrative biological analysis (July 20, 10:00am, PST (1:00pm EST), Building 2 Room 2224)

  • Phylogenetic inference (June 15, 10:00 am rm 1308, bld 10). Power point presentation is here.

  • Homology, similarity search and alignments (May 5, 10:00 am rm 1308, bld 10).

  • Microarray data analysis. Part I. (March 9, 10:00 am rm 1308, bld 10). Power point presentation is here.

2009 How-to Courses:

  • GeneGO Pathway analysis. Update on the newest version of MetaCore. (November, 11, 10:00 am bld 10). To get GeneGO account go to the end of BSR home page

  • NextBio knowledge discovery search engine (October 6, 10:00 am, bld 10). NextBio Users guide is here.

  • Prior How-to Courses:


    Past Offered Courses (pre- 2007):

    • Introduction to Bioinformatics

      • The content of this prior class has been made into a web resource at wikiomics.org

    If you are interested in any of these courses or would like to have specific topics covered, please contact : eroshkin@burnham.org with requests.



  • powerpoint_microarrays  Download me! Download
    NextBio UserGuide.  Download me! Download
    Phylogenetic inference presentation  Download me! Download
    Statistics_class_presentation_1 - v1  Download Me! download 
    How Statistics Can Empower Your Research
    Statistics_class_presentation_2  Download me! Download
    Presentation from Feb 23, 2011 class
    Homology class presentation 2011-04-05  Download me! Download
    MicroarrayDataAnalysis_May26th_2011.ppt  Download me! Download
    Microarray Data Analysis class May 26th 2011
    Roy_presenting_bioinfo_class_20110526
    bioinfo_class_20110526
    bioinfo_class_20110526.jpg  Download me! Download
    Roy_presenting_bioinfo_class_20110526  Download me! Download
    Next-generation sequencing technology and data analysis  Download me! Download
    Next-generation sequencing technology and data analysis
    Statistic Primer 12_15_2011  Download me! Download
    Statistic Primer 12_15_2011
    Advanced Statistics I presentation  Download me! Download
    presentation
    CCLE for the owrkshop  Download me! Download
    CCLE for the owrkshop
    Oncomine for the workshop  Download me! Download
    Oncomine for the workshop
    GEO for the workshop  Download me! Download
    GEO for the workshop
    bioinformatics_analysis_Caspase8.ppt  Download me! Download
    Intro and variation analysis
    Altered Caspase-8 Expression.ppt  Download me! Download
    Altered Caspase-8 Expression
    The regulation of Caspase 8.pptx  Download me! Download
    The regulation of Caspase 8.pptx
    Transfac_explain  Download me! Download
    presentation
    tramsfac pic1  Download me! Download
    transfac pic2  Download me! Download
    tansfac PRESENTATION  Download me! Download
    Systems Biology class - Ally  Download me! Download
    Systems Biology class - Ally
    Systems Biology class  Download me! Download
    Systems Biology class
    Do It Yourself Systems Biology Class PPT  Download me! Download
    Do It Yourself Systems Biology: The Hidden Treasure in Pathway Analysis
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